Thanks for the advice everyone. I emailed Sean at Caterham today, and he was very prompt to reply.
I am supposed to use the plain washers supplied on the uprights between the calipers and uprights. This gives some clearance, but the disc isn't central in the caliper. As I'm a bit of a perfectionist, I'm going to make up some washers of the correct thickness
Sean also confirmed that the manual is incorrect with regard to the steering rack bolts. It still says that a washer is needed under the bolt head above the clamp, when it's obvious from the way it is machined that the cap head should drop into the machined recess.
Oh dear, only done the front suspension, and I'm already doubting the manual