Hi Nick,
Sorry for not getting back sooner - I've been in the garage trying to get my steering rack sorted.
Sounds like its a lot better than it was - you've obviously been consulting the Weber manual regarding setting the idle mixture screws .
You mention about balancing the carb itself. In theory, you shouldn't have to balance them as the butterflys are operated by the same throttle spindle. On an old carb a different reading meant a bent spindle which would have to be changed. However , if you have this problem check if you have Air By-Pass screws on the carb (number 26 on the weber diagram). They normally have a white plastic cap on them. When you set up the carb, make sure these are screwed fully in - note you have to undo the locknut first. If there is a difference between the flow through both sides of the carb you can alter the relevant bleed screw to let more air pass the butterfly to balance up the flow. Once both are balanced individually, you can then balance the two together as you have already done.
Try this and see if it makes a difference before you alter anything else. Out of interest what idle jets and choke size have you got in?
I have just noticed your post on the timing. Can you take a picture of your dizzy to see if I can identify it. Please keep the photo small (. Will blatmail you my email.
Regards ,
Giles